FINAL SCHEDULE
Sunday,
September 26 – Workshops and Tutorials |
08:30
|
Workshop and tutorial registration
|
09:00 |
ESCS1 Student
Symposium
|
Tutorial
1
Working with next-generation sequencing data
|
Tutorial
2
Use of semantic web resources in computational biology and
bioinformatics
|
Tutorial
3
Current methods and applications for regulatory sequence analysis
|
Tutorial
4
Protein structure validation
|
Workshop
1
Learning from perturbation effects
|
Workshop
2
Annotation, Interpretation and Management of Mutations (AIMM)
|
10:30
|
Coffee break
|
11:00
|
ESCS1 (cont’d)
|
Tutorial
1
(cont’d)
|
Tutorial
2
(cont’d)
|
Tutorial
3
(cont’d)
|
Tutorial
4
(cont’d)
|
Workshop
1
(cont’d)
|
Workshop
2
(cont’d)
|
12:30
|
Lunch
|
13:30
|
ESCS1 (cont’d)
|
Tutorial
1
(cont’d)
|
Tutorial
2
(cont’d)
|
Tutorial
3
(cont’d)
|
Tutorial
4
(cont’d)
|
Workshop
1
(cont’d)
|
Workshop
2
(cont’d)
|
15:00
|
Coffee break
|
15:30
|
ESCS1 (cont’d)
|
Tutorial
1
(cont’d)
|
Tutorial
2
(cont’d)
|
Tutorial
3
(cont’d)
|
Tutorial
4
(cont’d)
|
Workshop
1
(cont’d)
|
Workshop
2
(cont’d)
|
17:00
|
End of workshops and tutorials |
Sunday,
September 26 – Conference Opening
|
16:00
|
Conference registration open
|
17:30
|
Conference opening and welcome
|
17:40
|
Keynote 1 - Peer Bork
Systemic analysis of biological systems: lessons from a small
single bacterium and a large complex community
|
18:30
|
PT1 - Utopia
Documents: linking scholarly literature with research data. Teresa K. Attwood, Douglas B. Kell, Philip
McDermott, James Marsh, Steve Pettifer and David Thorne.
|
18:50
|
PT2 - Integrating
genome assemblies with MAIA. Jurgen Nijkamp, Wynand Winterbach,
Marcel van den Broek, Jean-Marc Daran, Marcel Reinders and Dick de Ridder.
|
19:10
|
PT3 - A Graphical
Method for Reducing and Relating Models in Systems Biology. Steven Gay, Sylvain Soliman and François
Fages.
|
19:30
|
Walk to the reception venue
|
20:00
|
Welcome reception
|
21:30
|
End of welcome reception
|
Monday,
September 27
|
08:30
|
Registration and welcome breakfast & business announcements
|
09:00
|
Keynote 2 - Michael J. E. Sternberg
Modeling protein structure, function, and interactions
|
|
PROCEEDINGS TRACK |
TECH TRACK
|
09:50
|
PT4 - Vorescore - Fold Recognition improved
by Rescoring of Protein Structure Models. Gergely
Csaba and Ralf Zimmer.
|
TT1 - Software for the data-driven researcher
of the future. Paul Fisher et al.
|
10:10
|
PT5 - Solenoid and Non-solenoid Protein
Recognition Using Stationary Wavelet Packet Transform. An Vo, Nha Nguyen and Heng Huang.
|
10:30
|
PT6 - Discriminatory Power of RNA Family
Models. Christian Hoener zu
Siederdissen and Ivo L. Hofacker.
|
TT2 - Clinical genomic analysis at IBM: from
HIV positive to Hypertension. Michal
Rosen-Zvi et al.
|
10:50
|
PT7 - RactIP: fast and accurate prediction of
RNA-RNA interaction using integer programming. Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi
Asai and Tatsuya Akutsu.
|
11:10
|
Coffee break
|
11:40
|
PT8 - Semi-Supervised Multi-Task Learning for
Predicting Interactions between HIV-1 and Human Proteins. Yanjun Qi, Oznur Tastan, Jaime G.
Carbonell, Judith Klein-Seetharaman and Jason Weston.
|
TT3 - The Microsoft Biology Foundation. Simon Mercer et al. |
12:00
|
PT9 - Candidate gene prioritization based on
spatially mapped gene expression: an application to XLMR. Rosario M. Piro, Ivan Molineris, Ugo Ala,
Paolo Provero and Ferdinando Di Cunto.
|
|
PROCEEDINGS TRACK |
TECH TRACK |
12:20
|
PT10 - Prediction of a prostate cancer
regulatory network from gene expression, microRNA and clinical data. Eric Bonnet, Tom Michoel and Yves Van de
Peer.
|
TT4 - Study capturing: from research question
to sample annotation. Kees van Bochove
et al.
|
12:40
|
PT11 - Inferring Cancer Subnetwork Markers
using Density-Constrained Biclustering. Phuong
Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander
Schoenhuth and Martin Ester.
|
13:00
|
Lunch
|
14:15 |
PT12 - Modeling associations between genetic
markers using Bayesian networks. Edwin
Villanueva and Carlos Dias Maciel.
|
TT5 - NextGen biology with TIBCO Spotfire. Christof Gaenzler et
al.
|
14:35 |
PT13 - Mass Spectrometry Data Processing
Using Zero-Crossing Lines in Multi-Scale of Gaussian Derivative Wavelet. Nha Nguyen, Heng Huang, Soontorn Oraintara
and An Vo.
|
14:55
|
PT14 - Detecting host factors involved in
virus infection by observing the clustering of infected cells in siRNA
screening images. Apichat Suratanee,
Ilka Wörz, Petr Matula, Anil Kumar, Lars Kaderali, Karl Rohr, Ralf
Bartenschlager, Roland Eils and Rainer König.
|
TT6 - Partitioning biological data with
transitivity clustering. Jan Baumbach
et al.
|
15:15
|
Announcement of ISMB/ECCB 2011 and ECCB 2012
|
15:30
|
Coffee break
|
16:00
|
Keynote 3 – Elaine Mardis. Analysis of whole-genome sequencing data from
paired tumor and normal genomes
|
16:50
|
PT15 - Characteristics of 454 Pyrosequencing
Data – Enabling Realistic Simulation with Flowsim. Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma and Inge
Jonassen.
|
ART MEETS SCIENCE
The Cosmopolitan Chicken Research Project. Koen Van Mechelen,
Jean-Jacques Cassiman. |
17:10
|
PT16 - A Fast algorithm for Exact Sequence
search in Biological Sequences using Polyphase Decomposition. Abhilash Srikantha, Ajit Bopardikar,
Kalyan Kaipa, Venkataraman Parthasarathy, KyuSang Lee, TaeJin Ahn and
Rangavittal Narayanan.
|
17:30
|
PT17 - Classification of ncRNAs using
position and size information in deep sequencing data. Florian Erhard and Ralf Zimmer.
|
17:50
|
Poster session (ODD numbers) & drinks
|
19:50
|
End of day
|
Tuesday,
September 28
|
08:30
|
Registration and business announcements
|
9:00
|
Keynote 4 - Rainer Spang
From large data sets to small networks |
|
PROCEEDINGS TRACK
|
TECH TRACK |
09:50
|
PT18 - Prototypes of elementary functional
loops unravel evolutionary connections between protein functions. Alexander Goncearenco and Igor Berezovsky.
|
|
10:10
|
PT19 - Improved sequence-based prediction of
disordered regions with multilayer fusion of multiple information sources. Marcin J. Mizianty, Wojciech Stach, Ke
Chen, Kanaka Durga Kedarisetti, Fatemeh Miri Disfani and Lukasz Kurgan.
|
TT7 - CLC bio, A Comprehensive Platform for
NGS Data Analysis. Roald Forsberg
|
10:30
|
PT20 - A predictor for toxin-like proteins
reveals cell modulators within viral genomes. Guy Naamati, Manor Askenazi and Michal Linial.
|
10:50
|
Coffee break
|
11:20
|
PT21 - Discriminative and informative
features for biomolecular text mining with ensemble feature selection. Sofie Van Landeghem,
Thomas Abeel, Yvan Saeys and Yves Van de Peer.
|
TT8 - DNA Sequencing with Illumina
Instruments and Chemistry: Current and Future Applications. Klaus Maisinger
|
11:40
|
PT22 - BioXSD: the common data-exchange
format for everyday bioinformatics Web services. Matúš Kalaš, Pål Puntervoll, Alexandre Joseph, Edita
Bartaševičiūtė, Armin Töpfer, Prabakar Venkataraman, Steve
Pettifer, Jan Christian Bryne, Jon Ison, Christophe Blanchet, Kristoffer
Rapacki and Inge Jonassen.
|
12:00
|
PT23 - Improving Disease Gene Prioritization
using the Semantic Similarity of Gene Ontology Terms. Andreas Schlicker, Thomas Lengauer and Mario Albrecht.
|
TT9 - Super-scale sequence data analysis with
hybrid core computing. John Leidel
|
12:20
|
PT24 - Discovering drug interactions: a
text-mining and reasoning approach based on properties of drug metabolism. Luis Tari, Saadat Anwar, Shanshan Liang,
James Cai and Chitta Baral.
|
12:40
|
Lunch
|
14:10
|
PT25 - Nonlinear dimension reduction and
clustering by Minimum Curvilinearity unfold neuropathic pain and tissue
embryological classes. Carlo Vittorio
Cannistraci, Timothy Ravasi, Franco Maria Montevecchi, Trey Ideker and
Massimo Alessio.
|
TT10 - How robust are NGS whole-genome
assemblies A case study with plant genomes. Niina Haiminen, Laxmi Parida
|
14:30
|
PT26 - A Varying Threshold Method for ChIP
Peak-Calling Using Multiple Sources of Information. - KuanBei Chen and Yu Zhang.
|
14:50
|
PT27 - is-rSNP: A novel technique for in
silico regulatory SNP detection. Geoff
Macintyre, James Bailey, Izhak Haviv and Adam Kowalczyk.
|
|
15:10
|
Poster session (EVEN numbers) with coffee
|
17:10
|
Bus departures to Bruges
|
17:30
|
Ride to Bruges
|
18:30
|
Free time in Bruges
|
20:00
|
Banquet Dinner
|
22:30
|
Busses to Ghent
|
00:00
|
Last bus to Ghent
|
Wednesday,
September 29
|
08:30
|
Registration and business announcements
|
09:00
|
Keynote 4 - Hans Westerhoff
Computing the flows of life |
|
PROCEEDINGS TRACK |
TECH TRACK
|
09:50
|
PT28 - Efficient parameter search for
qualitative models of regulatory networks using symbolic model checking. Gregory Batt, Michel Page, Irene Cantone,
Gregor Goessler, Pedro Monteiro and Hidde de Jong.
|
TT11 - Data integration in proteomics
through EnVsion and EnCore webservices. Rafael Jimenez et al.
|
10:10
|
PT29 - Bayesian experts in exploring reaction
kinetics of transcription circuits. Ryo
Yoshida, Masaya Saito, Hiromichi Nagao and Tomoyuki Higuchi.
|
10:30
|
PT30 - Dynamic Deterministic Effects
Propagation Networks: learning signalling pathways from longitudinal protein
array data. Christian Bender, Frauke
Henjes, Holger Fröhlich, Stefan Wiemann, Ulrike Korf and Tim Beißbarth.
|
TT12 - ELIXIR: A Sustainable European
Infrastructure for Biological Information. Andrew Lyall.
|
10:50
|
PT31 - A novel approach for determining
environment-specific protein costs: The case of Arabidopsis thaliana. Max Sajitz-Hermstein and Zoran Nikoloski.
|
11:10
|
Coffee break
|
11:40
|
PT32 - Decorrelating expression in gene-set
analysis. Dougu Nam.
|
TT13 - The Protein Data Bank in Europe
(PDBe) - Bringing Structure to Biology. Wim Vranken et al.
|
12:00
|
PT33 - How threshold behaviour affects the
use of subgraphs for network comparison. Tiago
Rito, Zi Wang, Charlotte Deane and Gesine Reinert.
|
|
PROCEEDINGS TRACK
|
TECH TRACK |
12:20
|
PT34 - Discovering Graphical Granger
Causality Using the Truncating Lasso Penalty. Ali Shojaie and George Michailidis.
|
TT14 - The
Universal Protein Resource (UniProt). Maria J. Martin.
|
12:40
|
Lunch
|
14:00
|
PT35 - Parsimony and Likelihood
Reconstruction of Human Segmental Duplications. Crystal Kahn, Benjamin Raphael and Borislav Hristov.
|
TT15 - Accurate next gen sequencing data analysis on cloud computing. Attila Bérces et al.
|
14:20
|
PT36 - Maximum Likelihood Estimation of
Locus-Specific Mutation Rates in Y-chromosome Short Tandem Repeats. Osnat Ravid-amir and Saharon Rosset.
|
|
14:40
|
Coffee break
|
15:10
|
Keynote 6 – Yves Van de Peer
The evolutionary significance of ancient whole genome duplications
and computational approaches to unveiling them
|
16:00
|
Closing remarks and awards
|
16:30
|
END OF CONFERENCE
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