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Below is the list of papers accepted to ECCB 2006 for frontal presentation.
36 papers have been accepted out of 197 submitted (18% ratio).
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Sequence Analysis I, Sun., January 21, 20:30-21:30
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Ariel S. Schwartz and Lior Pachter. Multiple Alignment by Sequence Annealing
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Dina Sokol, Gary Benson, and Justin Tojeira. Tandem Repeats over the Edit Distance
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Early-Bird Session -- Late-Breaking Results, Mon., January 22, 8:15-8:55
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Michael Sammeth and Sylvain Foissac. Algorithms on Splicing Graphs for Identifying and Aligning Alternative Splicing Events
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Saad Sheikh, Tanya Y. Berger-Wolf, Wanpracha Chaovalitwongse, Bhaskar DasGupta, and Mary V. Ashley. Reconstructing Sibling Relationships from Microsatellite Data
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Molecular Recognition and Computer Aided Drug Design, Mon., January 22, 10:00-11:30
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Rafael J. Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Cheryl Arrowsmith, Aled Edwards, and Janet M. Thornton. Analysis of Binding Site Similarity, Small-Molecule Similarity and Experimental Binding Profiles in the Human Cytosolic Sulfotransferase Family
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Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, and Hans-Peter Lenhof. Electrostatic Potentials of Proteins in Water: A Structured Continuum Approach
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Dietrich Rebholz-Schuhmann, Harald Kirsch, Miguel Arregui, Sylvain Gaudan, Mark Riethoven and Peter Stoehr. EBIMed Text Crunching to Gather Facts for Proteins from Medline
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Computational Genomics I, Mon., January 22, 12:00-14:00
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Doron Lipson, Zohar Yakhini, and Yonatan Aumann. Optimization of Probe Coverage for High-Resolution Oligonucleotide aCGH
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Abha Singh Bais, Steffen Grossmann, and Martin Vingron. Simultaneous Alignment and Annotation of cis-Regulatory Regions
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Matan Gavish, Amnon Peled, and Benny Chor. Genetic Code Symmetry and Efficient Design of GC-Constrained Coding Sequences
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Chun Ye and Eleazar Eskin. Discovering Tightly Regulated and Differentially Expressed Gene Sets in Whole Genome Expression Data
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Networks, Pathways and Systems, Mon., January 22, 15:30-18:00
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Natasa Przulj. Biological Network Comparison Using Graphlet Degree Distribution
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Eitan Hirsh and Roded Sharan. Identification of Conserved Protein Complexes Based on a Model of Protein Network Evolution
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Jose C. Clemente, Kenji Satou, and Gabriel Valiente. Phylogenetic Reconstruction from Non-Genomic Data
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Oleg Rokhlenko, Ydo Wexler, and Zohar Yakhini. Similarities and Differences of Gene Expression in Yeast Stress Conditions
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Early-Bird Session -- Late-Breaking Results, Tue., January 23, 8:15-8:55
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Kenzie D. MacIsaac and Ernest Fraenkel. Inferring Mechanistic Explanations for Transcription Factor Binding Changes
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Irit Gat-Viks. Refinement and Expansion of Signaling Pathways: The Osmotic Response Network in Yeast
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Structural Bioinformatics I, Tue., January 23, 10:00-11:30
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Fabian Birzele, Jan Erik Gewehr, Gergely Csaba, and Ralf Zimmer. Vorolign - Fast Structural Alignment Using Voronoi Contacts
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Angela Enosh, Sarel J. Fleishman, Nir Ben-Tal, and Dan Halperin. Prediction and Simulation of Motion in Pairs of Transmembrane Alpha-Helices
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Barak Raveh, Ofer Rahat, Ronen Basri, and Gideon Schreiber. Rediscovering Secondary Structures as Network Motifs - An Unsupervised Learning Approach
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Structural Bioinformatics II, Tue., January 23, 12:00-14:00
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Etai Jacob and Ron Unger. A Tale of Two Tails: Why are Terminal Residues of Proteins Exposed?
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Annalisa Marsico, Dirk Labudde, Tanuj Sapra, Daniel Muller, and Michael Schroeder. A Novel PatterR recognition Algorithm to Classify Membrane Protein Unfolding Pathways with High-Throughput Single Molecule Force Spectroscopy
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Iddo Friedberg, Tim Harder, Rachel Kolodny, Einat Sitbon, Zhanwen Li, and Adam Godzik. Using an Alignment of Fragment Strings for Comparing Protein Structures
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Yanay Ofran and Burkhard Rost. ISIS: Interaction Sites Identified from Sequence
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Sequence Analysis II, Tue., January 23, 15:30-17:30
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Huzefa Rangwala and George Karypis. Incremental Window-Based Protein Sequence Alignment Algorithms
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Yanni Sun and Jeremy Buhler. Designing Patterns for Profile HMM Search
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Sebastian Böcker. Simulating Multiplexed SNP Discovery Rates using Base-Specific Cleavage and Mass Spectrometry
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Keith Noto and Mark Craven. Learning Probabilistic Models of cis-Regulatory Modules that Represent Logical and Spatial Aspects
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Early-Bird Session -- Late-Breaking Results, Wed., January 24, 8:15-8:55
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Omer Tamuz,Yaron Singer, and Roded Sharan. PROMO: A Method for Identifying Modules in Protein Interaction Networks
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Sabine Dietmann, Michael Mader, Hans-Werner Mewes, and Martin Münsterkötter.
Temporal Aspects of Histone-Modifying Proteins Revealed by Sub-network Analysis
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Proteomics, Wed., January 24, 10:00-11:30
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Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, and Marc Sturm. TOPP - The OpenMS Proteomics Pipeline
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Jennifer Listgarten, Radford M. Neal, Sam T. Roweis, Peter Wong, and Andrew Emili. Difference Detection in LC-MS Data for Protein Biomarker Discovery
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Tomer Hertz and Chen Yanover. Identifying HLA Supertypes by Learning Distance Functions
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Comparative and Computational Genomics, Wed., January 24, 12:00-14:00
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Thomas Faraut, Simon de Givry, Patrick Chabrier, Thomas Derrien, Francis Galibert, Christophe Hitte, and Thomas Schiex. A Comparative Genome Approach to Marker Ordering
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Macha Nikolski and David James Sherman. Family Relationships: Should Consensus Reign?-Consensus Clustering for Protein Families
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Filip Hermans and Elena Tsiporkova. Merging Microarray Cell Synchronization Experiments Through Curve Alignment
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Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela Kristensen, Anne-Lise Børresen-Dale, Eytan Ruppin, and Roded Sharan. A Supervised Approach for Identifying Discriminating Genotype Patterns and its Application to Breast Cancer Data
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Evolution and Phylogenetics, Wed., January 24, 15:30-17:30
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Pawel Gorecki and Jerzy Tiuryn. Inferring Phylogeny from Whole Genomes
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Matthias Bernt, Daniel Merkle, and Martin Middendorf. Using Median Sets for Inferring Phylogenetic Trees
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Guohua Jin, Luay Nakhleh, Sagi Snir, and Tamir Tuller. Efficient Parsimony-Based Methods for Phylogenetic Network Reconstruction
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Matan Ninio, Eyal Privman, Tal Pupko, and Nir Friedman. Phylogeny Reconstruction: Increasing the Accuracy of Pairwise Distance Estimation Using Bayesian Inference of Evolutionary Rates
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